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First, a schematic depiction of how I interpret what we already know the induction of the competence regulon:
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But Sxy levels are also regulated at translation, in addition to at transcription. The wild-type sxy mRNA transcript contains a stem-loop structure that inhibits its translation. Mutations that disrupt the stem-loop structure in the 5’-UTR are hypercompetent (e.g. the sxy-1 mutation). In wild-type cells, unknown factor(s) disrupt the stem-loop to induce the translation of sxy transcript in competence medium.
Now a schematic depiction of how I interpret the model for purine repression of competence:
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A hypothesis: The sxy transcript stem-loop is stabilized in the presence of purines (either directly or indirectly), blocking the production of Sxy protein and thus the activation of the competence regulon. When purine pools are depleted, the stem-loop is disrupted. This predicts that addition of purines and purR mutations will inhibit sxy translation more than sxy transcription.
A corollary hypothesis: Purines block DNA translocation by PurR-dependent repression of the rec-2 gene, whose promoter contains a putative PurR binding site. A potential test of this hypothesis would be to treat sxy-1 competent cultures with purines. We would predict that if PurR directly represses rec-2, DNA translocation would be inhibited (but DNA uptake would not). Obviously, checking rec-2 transcription relative to other competence genes would make sense here as well, but the functional test would be most compelling.
Is that the basic notion? I know there’s a bunch of other experiments that have been done that I need to find out about…
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